Archive for the 'Disciplinary Archives' Category

Tools Allow Users to Create Automatically Updated Lists from Research Papers in Economics Database

Posted in Disciplinary Archives, Web 2.0 on July 13th, 2008

Research Papers in Economics (RePEc) offers two tools that allow users to create lists from its database: (1) a reading list tool (e.g., Socio-Economics of Fisheries and Aquaculture), and (2) a customized publication compilations tool (e.g., University of Connecticut Economics PhD Alumni). Reading lists are automatically updated each week; publication compilations are automatically updated each month.

Read more about it at "Using RePEc for Syllabi, Bibliographies and Publication Lists."

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Microsoft Releases Beta of Article Authoring Add-in for Microsoft Office Word 2007

Posted in Disciplinary Archives, E-Prints, Open Access, Self-Archiving on June 4th, 2008

Microsoft has released a beta version of its Article Authoring Add-in for Microsoft Office Word 2007.

Here's an excerpt from the product's home page:

Beta 1 of Word add-in to enhance the authoring of scientific and technical articles, including support for the National Library of Medicine XML format This Beta 1 release enables reading and writing of XML-based documents in the format used by the National Library of Medicine for archiving scientific articles.

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Repository Interface for Overlaid Journal Archives: Results from an Online Questionnaire Survey

Posted in Digital Repositories, Disciplinary Archives, E-Journals, E-Prints, Open Access, Publishing, Scholarly Communication, Scholarly Journals, Self-Archiving on April 10th, 2008

The RIOJA project has released Repository Interface for Overlaid Journal Archives: Results from an Online Questionnaire Survey.

Here's an excerpt from the "Introduction":

The Repository Interface for Overlaid Journal Archives (RIOJA) project (http://www.ucl.ac.uk/ls/rioja) is an international partnership of members of academic staff, librarians and technologists from UCL (University College London), the University of Cambridge, the University of Glasgow, Imperial College London and Cornell University. It aims to address some of the issues around the development and implementation of a new publishing model, that of the overlay journal - defined, for the purposes of the project, as a quality-assured journal whose content is deposited to and resides in one or more open access repositories. The project is funded by the Joint Information Systems Committee (JISC, http://www.jisc.ac.uk/) and runs from April 2007 to June 2008.

The RIOJA project will create an interoperability toolkit to enable the overlay of certification onto papers housed in subject repositories. The intention is that the tool will be generic, helping any repository to realise its potential to act as a more complete scholarly resource. The project will also create a demonstrator overlay journal, using the arXiv repository and OJS software, with interaction between the two facilitated by the RIOJA toolkit.

To inform and shape the project, a survey of Astrophysics and Cosmology researchers has been conducted. The findings from that survey form the basis of this report.

The project team will also undertake formal and informal discussion with publishers and with academic and managing members of editorial boards. The survey and supplementary discussions will help to ensure that the RIOJA outputs address the needs and expectations of the research community. Finally, the overall long-term sustainability of a repository-overlay journal will be assessed. The project will examine the costs of adding peer review to arXiv deposits, of implementing and maintaining the functionality which the survey shows to be most valued by researchers, and of providing long-term preservation of content, and will aim to identify and appraise possible cost-recovery business models.

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67 Plagiarized Papers from Turkey Removed from arXiv

Posted in Disciplinary Archives, E-Prints, Open Access, Scholarly Communication, Self-Archiving on September 6th, 2007

The arXiv archive has removed 67 plagiarized papers, which were written by 15 Turkish physicists. Questions about the physics expertise of two of the authors emerged during their oral dissertation defenses, and the investigation widened from there.

Source: “Turkish Professors Uncover Plagiarism in Papers Posted on Physics Server.” The Chronicle of Higher Education News Blog, 6 September 2007.

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AONS: Scanning Repositories for Obsolete Digital Formats

Posted in Digital Preservation, Digital Repositories, Disciplinary Archives, Institutional Repositories, Open Access on September 3rd, 2007

The APSR AONS II project has released a beta version of the Automatic Obsolescence Notification System (AONS).

Here's an excerpt from the announcement on apsr_announcements:

Users can register with the service by providing a URL to a repository's format scan summary. The AONS service will display the summary and allow a repository manager to compare the formats of items in their repository with information from format registries such as PRONOM and Library of Congress. These registries flag any formats that are likely to become obsolete. Repository managers can then make curation decisions about any items at risk, such as upgrading their formats.

By downloading and installing an AONS locally, an institution can also take advantage of a pilot risk metrics implementation. . . .

The AONS software is the result of the AONS II project funded under APSR and developed by David Pearson, David Levy and Matthew Walker from the National Library of Australia (NLA) with an administrative user interface developed by David Berriman at ANU.

The software is able to be downloaded from Sourceforge at http://sourceforge.net/projects/aons and a mailing list is also available for support and feedback. As this is a beta release we welcome feedback to the Sourceforge mailing list to inform our testing which will continue until mid-September.

Please try out the pilot service by sending an email to cosi@apsr.edu.au to register with the service, and tell us which institution you are from. . . .

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Publisher Author Agreements

Posted in Copyright, Disciplinary Archives, E-Prints, Institutional Repositories, Publishing, Scholarly Communication, Scholarly Journals, Self-Archiving on August 5th, 2007

According to today's SHERPA/RoMEO statistics, 36% of the 308 included publishers are green ("can archive pre-print and post-print"), 24% are blue ("can archive post-print (i.e. final draft post-refereeing)"), 11% are yellow ("can archive pre-print (i.e. pre-refereeing)"), and 28% are white ("archiving not formally supported"). Looked at another way, 72% of the publishers permit some form of self-archiving.

These are certainly encouraging statistics, and publishers who permit any form of self-archiving should be applauded; however, leaving aside Creative Commons licenses and author agreements that have been crafted by SPARC and others to promote rights retention, publishers recently liberalized author agreements still raise issues that librarians and scholars should be aware of.

Looking deeper, there are publisher variations in terms of where e-prints can be self-archived. Typically, this might be some combination of the author's Website, institutional repository or Website, funding agency's server, or disciplinary archive. Some agreements allow deposit on any noncommercial or open access server. Restricting deposit to open access or noncommercial servers is perfectly legitimate in my view; more specific restrictions are, well, too restrictive. The problem arises when the agreement limits the author's deposit options to ones he or she doesn't have, such as only allowing deposit in an institutional repository when the author's institution doesn't have one or only allowing posting on an author's Website when the author doesn't have one.

Another issue is publisher requirements for authors to remove e-prints on publication, to modify e-prints after publication to reflect citation and publisher contact information, to replace e-prints with published versions, or to create their own versions of postprints. Low deposit rates in institutional repositories without institutional mandates suggest that anything that involves extra effort by authors is a deterrent to deposit. The above kinds of publisher requirements are likely to have equally low rates on compliance, resulting in deposited e-prints that do not conform to author agreements. To be effective, such requirements would have to be policed by publishers or digital repositories. Otherwise, they are meaningless and are best deleted from author agreements.

A final issue is retrospective deposit. We can think of the journal literature as an inverted pyramid, with the broad top being currently published articles and the bottom being the first published journal articles. The papers published since the emergence of author agreements that permit self-archiving are a significant resource; however, much of the literature precedes such agreements. The vast majority of these articles are under standard copyright transfer agreements, with publishers holding all rights. Consequently, it is very important that publishers clarify whether their relatively new self-archiving policies can be applied retroactively. Elsevier has done so:

When Elsevier changes its policies to enable greater academic use of journal materials (such as the changes several years ago in our web-posting policies) or to clarify the rights retained by journal authors, Elsevier is prepared to extend those rights retroactively with respect to articles published in journal issues produced prior to the policy change.

Elsevier is pleased to confirm that, unless explicitly noted to the contrary, all policies apply retrospectively to previously published journal content. If, after reviewing the material noted above, you have any questions about such rights, please contact Global Rights.

Unfortunately, many publishers have not clarified this issue. Under these conditions, whether authors can deposit preprints or author-created postprints hinges on whether these works are viewed as being different works from the publisher version, and, hence, owned by the authors. Although some open access advocates believe this to be the case, to my knowledge this has never been decided in a court of law. Michael Carroll, who is a professor at the Villanova University School of Law and a member of the Board of the Creative Commons, has said in an analysis of whether authors can put preprints of articles published using standard author agreements under Creative Commons licenses:

Although technically distinct, the copyrights in the pre-print and the post-print overlap. The important point to understand is that copyright grants the owner the right to control exact duplicates and versions that are "substantially similar" to the copyrighted work. (This is under U.S. law, but most other jurisdictions similarly define the scope of copyright).

A pre-print will normally be substantially similar to the post-print. Therefore, when an author transfers the exclusive rights in the work to a publisher, the author precludes herself from making copies or distributing copies of any substantially similar versions of the work as well.

Much progress has been made in the area of author agreements, but authors must still pay careful attention to the details of agreements, which vary considerably by publisher. The SHERPA/RoMEO—Publisher Copyright Policies & Self-Archiving database is a very useful and important tool and users should actively participate in refining this database; however, authors are well advised not to stop at the summary information presented here and to go to the agreement itself (if available). It would be very helpful if a set of standard author agreements that covered the major variations could be developed and put into use by the publishing industry.

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Friday’s OAI5 Presentations

Posted in Data Sets, Digital Repositories, Disciplinary Archives, E-Journals, E-Prints, Open Access, Scholarly Communication on April 20th, 2007

Presentations from Friday’s sessions of the 5th Workshop on Innovations in Scholarly Communication in Geneva are now available.

Here are a few highlights from this major conference:

  • Doctoral e-Theses; Experiences in Harvesting on a National and European Level (PowerPoint): "In the presentation we will show some lessons learned and the first results of the Demonstrator, an interoperable portal of European doctoral e-theses in five countries: Denmark, Germany, the Netherlands, Sweden and the UK."
  • Exploring Overlay Journals: The RIOJA project (PowerPoint): "This presentation introduces the RIOJA (Repository Interface to Overlaid Journal Archives) project, on which a group of cosmology researchers from the UK is working with UCL Library Services and Cornell University. The project is creating a tool to support the overlay of journals onto repositories, and will demonstrate a cosmology journal overlaid on top of arXiv."
  • Dissemination or Publication? Some Consequences from Smudging the Boundaries between Research Data and Research Papers (PDF): "Project StORe’s repository middleware will enable researchers to move seamlessly between the research data environment and its outputs, passing directly from an electronic article to the data from which it was developed, or linking instantly to all the publications that have resulted from a particular research dataset."
  • Open Archives, The Expectations of the Scientific Communities (RealVideo): "This analysis led the French CNRS to start the Hal project, a pluridisciplinary open archive strongly inspired by ArXiv, and directly connected to it. Hal actually automatically transfers data and documents to ArXiv for the relevant disciplins; similarly, it is connected to Pum Med and Pub Med Central for life sciences. Hal is customizable so that institutions can build their own portal within Hal, which then plays the role of an institutional archive (examples are INRIA, INSERM, ENS Lyon, and others)."

(You may want to download PowerPoint Viewer 2007 if you don’t have PowerPoint 2007).

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OpenDOAR API

Posted in Digital Repositories, Disciplinary Archives, Institutional Repositories, Open Access, Scholarly Communication on April 18th, 2007

The OpenDOAR project has announced the availability of an API for accessing digital repository data in their database.

Here’s an excerpt from the press release:

OpenDOAR, as a SHERPA project, is pleased to announce the release of an API that lets developers use OpenDOAR data in their applications. It is a machine-to-machine interface that can run a wide variety of queries against the OpenDOAR Database and get back XML data. Developers can choose to receive just repository titles & URLs, all the available OpenDOAR data, or intermediate levels of detail. They can then incorporate the output into their own applications and ‘mash-ups’, or use it to control processes such as OAI-PMH harvesting. . . .

OpenDOAR is a continuing project hosted at the University of Nottingham under the SHERPA Partnership. OpenDOAR maintains and builds on a quality-assured list of the world’s Open Access Repositories. OpenDOAR acts as a bridge between repository administrators and the service providers who make use of information held in repositories to offer search and other services to researchers and scholars worldwide.

A key feature of OpenDOAR is that all of the repositories we list have been visited by project staff, tested and assessed by hand. We currently decline about a quarter of candidate sites as being broken, empty, out of scope, etc. This gives a far higher quality assurance to the listings we hold than results gathered by just automatic harvesting. OpenDOAR has now surveyed over 1,100 repositories, producing a classified Directory of over 800 freely available archives of academic information.

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Fez+Fedora Repository Software Gains Traction in US

Posted in Digital Repositories, Disciplinary Archives, Fedora, Institutional Repositories, Open Access, Open Source Software, Scholarly Communication on March 2nd, 2007

The February 2007 issue of Sustaining Repositories reports that more US institutions are using or investigating a combination of Fez and Fedora (see the below quote):

Fez programmers at the University of Queensland (UQ) have been gratified by a surge in international interest in the Fez software. Emory University Libraries are building a Fez repository for electronic theses. Indiana University Libraries are also testing Fez+Fedora to see whether to replace their existing DSpace installation. The Colorado Alliance of Research Libraries (http://www.coalliance.org/) is using Fez+Fedora for their Alliance Digital Repository. Also in the US, the National Science Digital Library is using Fez+Fedora for their Materials Science Digital Library (http://matdl.org/repository/index.php).