Category: Open Science

"Open Data, [Open] Access: Linking Data Sharing and Article Sharing in the Earth Sciences"

Samantha Teplitzky has published "Open Data, [Open] Access: Linking Data Sharing and Article Sharing in the Earth Science" in the Journal of Librarianship and Scholarly Communication.

Here's an excerpt:

INTRODUCTION The norms of a research community influence practice, and norms of openness and sharing can be shaped to encourage researchers who share in one aspect of their research cycle to share in another. Different sets of mandates have evolved to require that research data be made public, but not necessarily articles resulting from that collected data. In this paper, I ask to what extent publications in the Earth Sciences are more likely to be open access (in all of its definitions) when researchers open their data through the Pangaea repository. METHODS Citations from Pangaea data sets were studied to determine the level of open access for each article. RESULTS This study finds that the proportion of gold open access articles linked to the repository increased 25% from 2010 to 2015 and 75% of articles were available from multiple open sources.

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Open Data: The Researcher Perspective

Elsevier and the Centre for Science and Technology Studies have released Open Data: The Researcher Perspective .

Here's an excerpt:

Combining information from a bibliometric analysis, a survey and case studies, this report examines how researchers share data, the attitudes of researchers toward sharing data, and why researchers might be reticent to share data.

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"Openness as Social Praxis"

Matthew Longshore Smith and Ruhiya Seward have published "Openness as Social Praxis" in First Monday.

Here's an excerpt:

The paper "Fifty shades of open" by Pomerantz and Peek (2016) highlighted the increasing ambiguity and even confusion surrounding this term. This article builds on Pomerantz and Peek’s attempt to disambiguate the term by offering an alternative understanding to openness —that of social praxis. More specifically, our framing can be broken down into three social processes: open production, open distribution, and open consumption. Each process shares two traits that make them open: you don’t have to pay (free price), and anyone can participate (non-discrimination) in these processes.

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"European Commission Considering Leap into Open-Access Publishing"

Martin Enserink has published "European Commission Considering Leap into Open-Access Publishing" in Science.

Here's an excerpt:

The European Commission, which spends more than £10 billion annually on research, may follow two other big league funders, the Wellcome Trust and the Bill & Melinda Gates Foundation, and set up a “publishing platform” for the scientists it funds, in an attempt to accelerate the transition to open-access publishing in Europe.

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"On the Reuse of Scientific Data"

Irene V. Pasquetto, Bernadette M. Randles, and Christine L. Borgman have published "On the Reuse of Scientific Data" in Data Science Journal.

Here's an excerpt:

Data sharing practices, especially motivations and incentives, have received far more study than has data reuse, perhaps because of the array of contested concepts on which reuse rests and the disparate contexts in which it occurs. Here we explicate concepts of data, sharing, and open data as a means to examine data reuse. We explore distinctions between use and reuse of data. Lastly we propose six research questions on data reuse worthy of pursuit by the community: How can uses of data be distinguished from reuses? When is reproducibility an essential goal? When is data integration an essential goal? What are the tradeoffs between collecting new data and reusing existing data? How do motivations for data collection influence the ability to reuse data? How do standards and formats for data release influence reuse opportunities? We conclude by summarizing the implications of these questions for science policy and for investments in data reuse.

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Towards a Competitive and Sustainable Open Access Publishing Market in Europe

OpenAIRE has released Towards a Competitive and Sustainable Open Access Publishing Market in Europe.

Here's an excerpt:

Without intervention, immediate OA to just half of Europe's scientific publications will not be achieved until 2025 or later. Readers in academia have greater access, to more content, than ever before. Despite this, the majority of publications arising from public investments in research remain in accessible to the public, and the growth of OA appears to be slowing.

This study considers the economic factors contributing to the current state of the open access publishing market, and evaluates the potential for European policymakers to enhance market competition and sustainability in parallel to increasing access.

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PubMed Launches LinkOut to Institutional Repository Full-Text Publications and Other Resources

PubMed has launched LinkOut.

Here's an excerpt from the announcement:

PubMed users can now see the icon that links to the full text deposited at an institutional repository (IR) using LinkOut. The LinkOut service allows you to link to full text, library holdings, and other relevant external resources from PubMed and other NCBI databases.

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A Snapshot of Open Data and Open Science Policies in Europe

SPARC Europe and the DCC have released A Snapshot of Open Data and Open Science Policies in Europe.

Here's an excerpt from the announcement:

This report is the first in a series that will seek to shed light on similarities and differences in Open Data and Open Science policies between European nations, and to assess their effectiveness in opening research data.

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"No Scholar Is an Island: The Impact of Sharing in the Work Life of Scholars"

Carol Tenopir et al. have published "No Scholar Is an Island: The Impact of Sharing in the Work Life of Scholars" in .

Here's an excerpt:

In an international survey of 1,000 published scholars, the Beyond Downloads project examined their sharing behaviours in order to gain a more contextualized and accurate picture of their usage beyond download patterns and citation counts. Scholars share published articles with others as a mode of content discovery and dissemination, particularly if they work in groups, and most expect to increase their sharing in the future.

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PLOS: Response to NIH RFI—Strategies for NIH Data Management, Sharing, and Citation

PLOS has released Response to NIH RFI—Strategies for NIH Data Management, Sharing, and Citation.

Here's an excerpt:

We write to express the views of the Public Library of Science, a fully Open Access Publisher of seven Research Journals, in response to your RFI on Data Sharing, Management, and Citation. Open access to Research Articles is just the first step in what we consider should be the end state for all publicly funded research, and we support broader efforts towards open science. We are developing our own policies to help establish a new norm in which upon publication of a journal article, if not before, all of the underlying data (where ethically appropriate) is openly available to access and reuse without restriction according to the FAIR principles for data management to make data Findable, Accessible, Interoperable and Re-usable.

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"Does Online Access Promote Research in Developing Countries? Empirical Evidence from Article-Level Data"

Frank Mueller-Langer et al. have self-archived "Does Online Access Promote Research in Developing Countries? Empirical Evidence from Article-Level Data."

Here's an excerpt:

Universities in developing countries have rarely been able to subscribe to academic journals in the past. The "Online Access to Research in the Environment" initiative (OARE) provides institutions in developing countries with free online access to more than 5,700 environmental science journals. Here we analyze the effect of OARE registration on scientific output by research institutions in five developing countries. We apply a difference-in-difference estimation method using panel data for 18,955 journal articles from 798 research institutions. We find that online access via OARE increases publication output by at least 43% while lower-ranked institutions located in remote areas benefit less.

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"The Durability and Fragility of Knowledge Infrastructures: Lessons Learned from Astronomy"

Christine L. Borgman, Peter T. Darch, Ashley E. Sands, and Milena S. Golshan have self-archived "The Durability and Fragility of Knowledge Infrastructures: Lessons Learned from Astronomy."

Here's an excerpt:

Infrastructures are not inherently durable or fragile, yet all are fragile over the long term. Durability requires care and maintenance of individual components and the links between them. Astronomy is an ideal domain in which to study knowledge infrastructures, due to its long history, transparency, and accumulation of observational data over a period of centuries. Research reported here draws upon a long-term study of scientific data practices to ask questions about the durability and fragility of infrastructures for data in astronomy. Methods include interviews, ethnography, and document analysis. As astronomy has become a digital science, the community has invested in shared instruments, data standards, digital archives, metadata and discovery services, and other relatively durable infrastructure components. Several features of data practices in astronomy contribute to the fragility of that infrastructure. These include different archiving practices between ground- and space-based missions, between sky surveys and investigator-led projects, and between observational and simulated data. Infrastructure components are tightly coupled, based on international agreements. However, the durability of these infrastructures relies on much invisible work—cataloging, metadata, and other labor conducted by information professionals. Continual investments in care and maintenance of the human and technical components of these infrastructures are necessary for sustainability.

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"On the Cost of Knowledge: Evaluating the Boycott against Elsevier"

Tom Heyman Pieter Moors, and Gert Storms have published "On the Cost of Knowledge: Evaluating the Boycott against Elsevier" in Frontiers in Research Metrics and Analytics.

Here's an excerpt:

To get an idea about the success rate of the "won't publish" resolution, we checked signatories' publication history after they signed the petition. Using ResearchGate, Google Scholar, Academia.edu, LinkedIn, ScienceDirect, and lab or personal websites, we were able to compile a bibliography for a large sample of "won't publish" signatories. Due to the time-consuming nature of this research, we limited ourselves to two subject areas, Chemistry and Psychology, each with approximately 500 signatories.

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"SCOAP3 Journals Double Downloads"

SCOAP3 has released "SCOAP3 Journals Double Downloads."

Here's an excerpt from the announcement:

The four largest journals participating in SCOAP3, two published by Elsevier and two by SpringerNature in partnership with the Italian Physical Society (SIF), and the Italian Institute for Advanced Studies (SISSA) have now analysed their logs to understand the impact of SCOAP3.

Elsevier announced that downloads to their two journals, Physics Letters B and Nuclear Physics B have doubled since they became Open Access at the start of SCOAP3 in January 2014. This increase is remarkable as SCOAP3 covers the most recent 3,500 articles in the journals, while most of the historic content of over 77,000 articles, is available to subscribers.

SpringerNature announced that since January 2014 they have observed a doubling of downloads across their two learned-society journals participating in SCOAP3: European Physical Journal C and the Journal of High Energy Physics.

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"How Do Scientists Define Openness? Exploring the Relationship between Open Science Policies and Research Practice"

Nadine Levin et al. have published "How Do Scientists Define Openness? Exploring the Relationship between Open Science Policies and Research Practice " in the Bulletin of Science, Technology & Society

Here's an excerpt:

This article documents how biomedical researchers in the United Kingdom understand and enact the idea of "openness." . . . This study is based on 22 in-depth interviews with U.K. researchers in systems biology, synthetic biology, and bioinformatics, which were conducted between September 2013 and February 2014. Through an analysis of the interview transcripts, we identify seven core themes that characterize researchers' understanding of openness in science and nine factors that shape the practice of openness in research.

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"Truth in Science Publishing: A Personal Perspective"

Thomas C. Südhof has published "Truth in Science Publishing: A Personal Perspective" in PLoS Biology.

Here's an excerpt:

Scientists, public servants, and patient advocates alike increasingly question the validity of published scientific results, endangering the public's acceptance of science. Here, I argue that emerging flaws in the integrity of the peer review system are largely responsible. Distortions in peer review are driven by economic forces and enabled by a lack of accountability of journals, editors, and authors. One approach to restoring trust in the validity of published results may be to establish basic rules that render peer review more transparent, such as publishing the reviews (a practice already embraced by some journals) and monitoring not only the track records of authors but also of editors and journals.

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"The Journal Article as a Means to Share Data: A Content Analysis of Supplementary Materials from Two Disciplines"

Jeremy Kenyon, Nancy Sprague, and Edward Flathers have published "The Journal Article as a Means to Share Data: a Content Analysis of Supplementary Materials from Two Disciplines" in the Journal of Librarianship and Scholarly Communication.

Here's an excerpt:

INTRODUCTION The practice of publishing supplementary materials with journal articles is becoming increasingly prevalent across the sciences. We sought to understand better the content of these materials by investigating the differences between the supplementary materials published by authors in the geosciences and plant sciences. METHODS We conducted a random stratified sampling of four articles from each of 30 journals published in 2013. In total, we examined 297 supplementary data files for a range of different factors. RESULTS We identified many similarities between the practices of authors in the two fields, including the formats used (Word documents, Excel spreadsheets, PDFs) and the small size of the files. There were differences identified in the content of the supplementary materials: the geology materials contained more maps and machine-readable data; the plant science materials included much more tabular data and multimedia content. DISCUSSION Our results suggest that the data shared through supplementary files in these fields may not lend itself to reuse. Code and related scripts are not often shared, nor is much 'raw' data. Instead, the files often contain summary data, modified for human reading and use. CONCLUSION Given these and other differences, our results suggest implications for publishers, librarians, and authors, and may require shifts in behavior if effective data sharing is to be realized.

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Open Access: The Beast That No-One Could—or Should—Control?

Stephen Curry has self-archived "Open Access: The Beast That No-One Could—or Should—Control?"

Here's an excerpt:

To set the scene, I will begin with a brief description of the open access movement and recent policy initiatives before discussing their impact on the attitudes of scientists towards the broader open science agenda and public engagement. I will then consider the effects of open access (and allied moves) on the authority and independence of science—concepts that are perturbed by the increasingly blurred boundary between the academy and the public. Lastly, I will focus attention on the various publics that are actively seeking to engage with science and scientists, mainly through advocacy groups or the growing ranks of citizen scientists; here, while the impact of open access appears relatively modest, it has the capacity to spring surprises that point to future growth.

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"A Vision for Open Cyber-Scholarly Infrastructures"

Costantino Thanos has published "A Vision for Open Cyber-Scholarly Infrastructures" in Publications.

Here's an excerpt:

The characteristics of modern science, i.e., data-intensive, multidisciplinary, open, and heavily dependent on Internet technologies, entail the creation of a linked scholarly record that is online and open. Instrumental in making this vision happen is the development of the next generation of Open Cyber-Scholarly Infrastructures (OCIs), i.e., enablers of an open, evolvable, and extensible scholarly ecosystem. The paper delineates the evolving scenario of the modern scholarly record and describes the functionality of future OCIs as well as the radical changes in scholarly practices including new reading, learning, and information-seeking practices enabled by OCIs.

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"Fifty Shades of Open"

Jeffrey Pomerantz and Robin Peek have published "Fifty Shades of Open" in First Monday.

Here's an excerpt:

Open source. Open access. Open society. Open knowledge. Open government. Even open food. The word "open" has been applied to a wide variety of words to create new terms, some of which make sense, and some not so much. This essay disambiguates the many meanings of the word "open" as it is used in a wide range of contexts.

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"Research Library Associations Endorse Open Data Accord"

ARL has released "Research Library Associations Endorse Open Data Accord."

Here's an excerpt:

IARLA [International Alliance of Research Library Associations] views the Science International accord on "Open Data in a Big Data World" as an important step towards creating and enabling this common vision of the importance of open data. In setting out principles for open data that are derived from emerging practices within the scientific community, the accord lends the voice of a key stakeholder to the case for open data and provides a practical road map for the implementation of open data at the global level.

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"Are Scientific Data Repositories Coping with Research Data Publishing?"

Massimiliano Assante et al. have published "Are Scientific Data Repositories Coping with Research Data Publishing?" in Data Science Journal.

Here's an excerpt:

This study analyses the solutions offered by generalist scientific data repositories, i.e., repositories supporting the deposition of any type of research data. These repositories cannot make any assumption on the application domain. They are actually called to face with the almost open ended typologies of data used in science. The current practices promoted by such repositories are analysed with respect to eight key aspects of data publishing, i.e., dataset formatting, documentation, licensing, publication costs, validation, availability, discovery and access, and citation. From this analysis it emerges that these repositories implement well consolidated practices and pragmatic solutions for literature repositories. These practices and solutions can not totally meet the needs of management and use of datasets resources, especially in a context where rapid technological changes continuously open new exploitation prospects.

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"The Open Access Interviews: Sir Timothy Gowers, Mathematician"

Richard Poynder has published "The Open Access Interviews: Sir Timothy Gowers, Mathematician " in Open and Shut?.

Here's an excerpt:

The idea of arXiv overlay journals was in the air for a long time. I think one impulse behind Discrete Analysis was the very hostile reaction from many people to the setting up of the open access journal Forum of Mathematics by Cambridge University Press, which (after a three-year free period) charges £750 per article.

It seems that a large proportion of mathematicians are implacably opposed to article processing charges, no matter what assurances are given that authors themselves will never be expected to pay out of their own pocket, and that ability to pay will not affect the choice of which articles to publish.

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"Congress Wants to Turn Obama’s Open Data Actions into Law"

Representative Derek Kilmer has released "Congress Wants to Turn Obama's Open Data Actions into Law."

Here's an excerpt:

A new bill introduced Thursday would give a legislative basis to a number of open data initiatives already underway in the federal government under executive order.

The Open, Public, Electronic and Necessary (OPEN) Government Data Act, introduced by Reps. Derek Kilmer, D-Wash., and Blake Farenthold, R-Texas, would build upon a number open data policies from the Obama administration that push federal agencies to make as much data as possible free for the public to use.

A Senate version of the bill will also soon be introduced by Sens. Brian Schatz, D-HI, and Ben Sasse, R-Neb.

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"The Academic, Economic and Societal Impacts of Open Access: An Evidence-Based Review"

Jonathan P. Tennant et al. have published an e-print for review of "The Academic, Economic and Societal Impacts of Open Access: An Evidence-Based Review" in F1000 Research.

Here's an excerpt:

This review presents published evidence of the impact of Open Access on the academy, economy and society. Overall, the evidence points to a favorable impact of OA on the scholarly literature through increased dissemination and reuse. OA has the potential to be a sustainable business venture for new and established publishers, and can provide substantial benefits to research- and development-intensive businesses, including health organisations, volunteer sectors, and technology. OA is a global issue, highlighted by inequalities beset at all levels between developing and developed nations, and largely fueled by financial inequality. Current levels of access in the developing world are insufficient and unstable, and only OA has the potential to foster the development of stable research ecosystems. While predatory publishing remains an ongoing issue, particularly in the developing world, increasing public engagement, development of OA policies, and discussion of sustainable and ethical publishing practices can remove this potential threat to OA.

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