Version 71, Scholarly Electronic Publishing Bibliography

Version 71 of the Scholarly Electronic Publishing Bibliography is now available from Digital Scholarship. This selective bibliography presents over 3,250 articles, books, and other digital and printed sources that are useful in understanding scholarly electronic publishing efforts on the Internet.

The Scholarly Electronic Publishing Bibliography: 2006 Annual Edition is also available from Digital Scholarship. Annual editions of the Scholarly Electronic Publishing Bibliography are PDF files designed for printing.

The bibliography has the following sections (revised sections are in italics):

1 Economic Issues
2 Electronic Books and Texts
2.1 Case Studies and History
2.2 General Works
2.3 Library Issues
3 Electronic Serials
3.1 Case Studies and History
3.2 Critiques
3.3 Electronic Distribution of Printed Journals
3.4 General Works
3.5 Library Issues
3.6 Research
4 General Works
5 Legal Issues
5.1 Intellectual Property Rights
5.2 License Agreements
6 Library Issues
6.1 Cataloging, Identifiers, Linking, and Metadata
6.2 Digital Libraries
6.3 General Works
6.4 Information Integrity and Preservation
7 New Publishing Models
8 Publisher Issues
8.1 Digital Rights Management
9 Repositories, E-Prints, and OAI
Appendix A. Related Bibliographies
Appendix B. About the Author
Appendix C. SEPB Use Statistics

Scholarly Electronic Publishing Resources includes the following sections:

Cataloging, Identifiers, Linking, and Metadata
Digital Libraries
Electronic Books and Texts
Electronic Serials
General Electronic Publishing
Images
Legal
Preservation
Publishers
Repositories, E-Prints, and OAI
SGML and Related Standards

Scholarly Electronic Publishing Weblog Update (2/6/08)

The latest update of the Scholarly Electronic Publishing Weblog (SEPW) is now available, which provides information about new works related to scholarly electronic publishing, such as books, journal articles, magazine articles, technical reports, and white papers.

Especially interesting are: "Carrots and Sticks: Some Ideas on How to Create a Successful Institutional Repository"; A DRIVER's Guide to European Repositories; The European Repository Landscape: Inventory Study into Present Type and Level of OAI Compliant Digital Repository Activities in the EU; "India, Open Access, the Law of Karma and the Golden Rule"; Investigative Study of Standards for Digital Repositories and Related Services; "The Mandates of January"; "The Preservation of Digital Materials"; "Open Access and Quality"; "Open Access to Electronic Theses and Dissertations"; "Planets: Integrated Services for Digital Preservation"; "PRONOM-ROAR: Adding Format Profiles to a Repository Registry to Inform Preservation Services"; "SPARC: Creating Innovative Models and Environments for Scholarly Research and Communication"; and "Usage Impact Factor: The Effects of Sample Characteristics on Usage-Based Impact Metrics."

SPARC Author Rights Forum Established

The Scholarly Publishing and Academic Resources Coalition has established a new mailing list: the SPARC Author Rights Forum.

Here's an excerpt from the press release:

SPARC (the Scholarly Publishing and Academic Resources Coalition) has introduced a new discussion forum on the topic of author rights. The SPARC Author Rights Forum provides a private and moderated venue for academic librarians to explore copyright and related issues in teaching and research—especially questions arising from the development of digital repositories and recent public access mandates.

The SPARC Author Rights Forum has been established to support educational outreach to authors on issues related to retaining their copy rights. Topics relevant to the list include, but are not limited to:

  • Ensuring copyright compliance with public access policies, including the new National Institutes of Health mandate
  • Rights of faculty under copyright and contract law
  • Availability and use of author addenda
  • Working with publishers to secure agreements to retain needed rights
  • Experiences in developing institutional copyright policies and educational programs

The list will focus primarily on the U.S. and Canadian legal environments, though members of the international community are welcome to join. Educators, researchers, policy makers, librarians, legal counsel, and all who have an interest in responsible author copyright management are encouraged to contribute. The SPARC Author Rights Forum is moderated by Kevin Smith, J.D., Scholarly Communications Officer for Duke University Libraries.

List membership is subject to approval and posts are moderated for appropriate topical content. To request membership in the SPARC Author Rights Forum, send any message to sparc-arforum-feed@arl.org.

Scholarship in the Age of Abundance: Enhancing Historical Research with Text-Mining and Analysis Tools Project

The Center for History and New Media's Scholarship in the Age of Abundance: Enhancing Historical Research with Text-Mining and Analysis Tools project has been awarded a two-year grant from the National Endowment for the Humanities.

Here's an excerpt from "Enhancing Historical Research with Text-Mining and Analysis Tools":

We will first conduct a survey of historians to examine closely their use of digital resources and prospect for particularly helpful uses of digital technology. We will then explore three main areas where text mining might help in the research process: locating documents of interest in the sea of texts online; extracting and synthesizing information from these texts; and analyzing large-scale patterns across these texts. A focus group of historians will be used to assess the efficacy of different methods of text mining and analysis in real-world research situations in order to offer recommendations, and even some tools, for the most promising approaches.

A Dialog with the Mellon Foundation's Don Waters on the Grand Text Auto Open Peer Review Experiment

Previously ("Book to Be Published by MIT Press Undergoing Blog-Based Open Peer Review"), DigitalKoans reported on an open-peer-review experiment on the Grand Text Auto Weblog.

Now, if:book has published a dialog between its staff, the book's author, and Donald J. Waters, the Andrew W. Mellon Foundation's Program Officer for scholarly communications, about the experiment.

Here's an excerpt from the posting:

[Waters] As I understand the explanations, there is a sense in which the experiment is not aimed at "peer review" at all in the sense that peer review assesses the qualities of a work to help the publisher determine whether or not to publish it. What the exposure of the work-in-progress to the community does, besides the extremely useful community-building activity, is provide a mechanism for a function that is now all but lost in scholarly publishing, namely "developmental editing." It is a side benefit of current peer review practice that an author gets some feedback on the work that might improve it, but what really helps an author is close, careful reading by friends who offer substantive criticism and editorial comments. . . . The software that facilitates annotation and the use of the network, as demonstrated in this experiment, promise to extend this informal practice to authors more generally.

DISC-UK Report on Web 2.0 Data Visualization Tools

JISC has released DISC-UK DataShare: Web 2.0 Data Visualisation Tools: Part 1—Numeric Data.

Here's an excerpt from the "Introduction":

Part 1 of this briefing paper will highlight some examples of new collaborative web services using Web 2.0 technologies which venture into the numeric data visualisation arena. These mashups allow researchers to upload and analyse their own data in ‘open’ and dynamic environments. Broadly speaking the numeric data being referred to could be micro-data (data about the individual), macro-data2 or country-level data, derived or summary data.

Research Blogging: Identifying, Indexing, and Presenting Posts about Peer-Reviewed Literature

Research Blogging is a new service that identifies, indexes, and presents new Weblog posts about peer-reviewed literature.

Here's an excerpt from its About page:

  • Bloggers—often experts in their field—find exciting new peer-reviewed research they'd like to share. They write thoughtful posts about the research for their blogs.
  • Bloggers register with us and use a simple one-line form to create a snippet of code to place in their posts. This snippet not only notifies our site about their post, it also creates a properly formatted research citation for their blog.
  • Our software automatically scans registered blogs for posts containing our code snippet. When it finds them, it indexes them and displays them on our front page—thousands of posts from hundreds of blogs, in one convenient place, organized by topic.
  • The quality of the posts listed on our site is monitored by the member bloggers. If a post doesn't follow our guidelines, it is removed from our database. Borderline cases may be discussed in our forums.

Are There 200,000 "Duplicate" Articles in Journals Indexed by Medline?

Based on a recent study published in Nature, it is possible that there may be as many as 200,000 duplicate articles (either articles that were published in multiple journals or plagiarized) in journals indexed by Medline. To conduct the study, Mounir Errami and Harold Garner utilized the eTBLAST software to analyze samples of Medline article abstracts in order to estimate the prevalence of duplicate articles.

Duplicate detection is an issue of great concern to both publishers and scholars. The CrossCheck project is allowing eight publishers to test the duplicate checking as part of the editorial process in a closed-access environment. In the project's home page, it states:

Currently, existing PD [plagiarism detection] systems do not index the majority of scholarly/professional content because it is inaccessible to crawlers directed at the open web. The only scholarly literature that is currently indexed by PD systems is that which is available openly (e.g. OA, Archived or illegitimately posted copies) or that which has been made available via third-party aggregators (e.g. ProQuest). This, in turn, means that any publisher who is interested in employing PD systems in their editorial work-flow is unable to do so effectively. Even if a particular publisher doesn't have a problem with plagiarized manuscripts, they should have an interest in making sure that their own published content is not plagiarized or otherwise illegitimately copied.

In order for CrossRef members to use existing PD systems, there needs to be a mechanism through which PD system vendors can, under acceptable terms & conditions, create and use databases of relevant scholarly and professional content.

Open access advocates have pointed out that one advantage of OA is that it allows the unrestricted analysis and manipulation of the full text of freely available works. Open access makes it possible for all interested parties, including scholars and others who might not have access to closed duplicate verification databases, to conduct whatever analysis as they wish and to make the results public without having to consider potential business impacts.

Read more about it at: "Copycat Articles Seem Rife in Science Journals, a Digital Sleuth Finds" and "How Many Papers Are Just Duplicates?"

International Study of Peer Review

The Publishing Research Consortium has released "Peer Review in Scholarly Journals: Perspective of the Scholarly Community—An International Study."

Here's an excerpt from the "Executive Summary":

The survey thus paints a picture of academics committed to peer review, with the vast majority believing that it helps scientific communication and in particular that it improves the quality of published papers. They are willing to play their part in carrying out review, though it is worrying that the most productive reviewers appear to be overloaded. Many of them are in fact willing to go further than at present and take on responsibility for reviewing authors’ data. Within this picture of overall satisfaction there are, however, some sizeable pockets of discontent. This discontent does not always translate into support for alternative methods of peer review; in fact some of those most positive about the benefits of peer review were also the most supportive of post-publication review. Overall, there was substantial minority support for post-publication review as a supplement to formal peer review, but much less support for open review as an alternative to blinded review.

Read more about it at "Peer Review Study."

Book to Be Published by MIT Press Undergoing Blog-Based Open Peer Review

Noah Wardrip-Fruin's draft of Expressive Processing: Digital Fictions, Computer Games, and Software Studies, which will be published by MIT Press, is undergoing an open peer-review process on the Grand Text Auto Weblog using a new plug-in version of CommentPress. The book is also undergoing a conventional peer-review process.

Read more about it at "Blog Comments and Peer Review Go Head to Head to See Which Makes a Book Better"and "Expressive Processing: An Experiment in Blog-Based Peer Review."

Digital Video on JoVE (Journal of Visualized Experiments)

In a digital video from the Google Tech Talks series, Moshe Pritsker, Editor-in-Chief of JoVE (Journal of Visualized Experiments), discusses that video-based journal.

Here's an excerpt from the abstract:

Contrasting the rapid advancement of scientific research itself, scientific communication still heavily relies on traditional print journals. Print journals however, lack the necessary characteristics to allow enable an effective transfer of knowledge, which is significantly impeding scientific progress. Addressing this problem, the Journal of Visualized Experiments (JoVE, www.jove.com) implemented a novel, video-based approach to scientific publishing, based on visualization of experimental studies. Created with the participation of scientists from leading research institutions (e.g. Harvard, MIT, and Princeton), JoVE provides solutions to the "bottleneck" of the contemporary biological research: transparency and reproducibility of biological experiments. JoVE has so far released 9 monthly issues that include over 150 video-protocols on experimental approaches in developmental biology, neuroscience, microbiology and other fields.

Mellon Foundation Awards Four Grants for Cooperative University Press Projects

The Andrew W. Mellon Foundation has awarded grants to four groups of university presses to support the cooperative publication of scholarly books and digital works in the fields of American Literatures, Ethnomusicology, Slavic Studies, and South Asian Studies. The Ethnomusicology project will develop a plan for publishing printed and digital works, and the American Literatures project will utilize a "a shared, centralized, external editorial service dedicated solely to managing the production of books in the initiative."

Here's an excerpt from the press release:

The four projects and participating presses are:

  • Slavic Studies: University of Wisconsin Press, Northwestern University Press, and the University of Pittsburgh Press;
  • American Literatures: New York University Press, Fordham University Press, Rutgers University Press, Temple University Press, and the University of Virginia Press;
  • South Asian Studies: Columbia University Press, the University of California Press, and the University of Chicago Press;
  • Ethnomusicology: Indiana University Press, Kent State University Press, and Temple University Press. . . .

Wisconsin, Northwestern, and Pittsburgh will use the Mellon funds to support the publication and promotion of first monographs in Russian, East European, and Central Asian studies. Although all three presses have strong publication lists in this field, this initiative will enable them to accept more first books by junior scholars, to work closely with those scholars to develop their authorial skills, and in some cases to underwrite the publication of works in paperback or the incorporation of expensive elements (such as color images). . . .

The American Literatures Initiative, led by NYU in collaboration with Fordham, Rutgers, Temple and Virginia, also seeks to publish promising scholars’ first books in their focus field of English-language literatures of Central and North America and the Caribbean. The most innovative aspect of the program will be the establishment of a shared, centralized, external editorial service dedicated solely to managing the production of books in the initiative. This service will handle all copyediting, design, layout, and typesetting costs, and manage each title through to the point where it is ready for printing. Mellon funds will also be used to pay authors modest royalty advances and develop robust, collaborative marketing efforts among the five presses—which will reduce costs for advertising and electronic marketing, publicity, academic conference exhibits, and other efforts. . . .

Major editorial goals of the Columbia-led South Asian Studies series will be to open up new archival material to scholars, to explore new theories and methods, and to develop scholarship that is both deep in expertise and broad in appeal across disciplines. . . .

The ethnomusicology project received a one-year planning grant, the first phase in establishing a cooperative publishing program that will include the digital publication of related field materials. Through their cooperative series Indiana, Kent State, and Temple will seek to broaden publishing opportunities for emerging scholars in ethnomusicology, and to offer scholars in ethnomusicology and related fields enhanced means of accessing these materials via the Web. In so doing the presses’ goal is to assist in disseminating scholarship and developing new methodologies in both research and publication. The project will be eligible to apply for continued funding at the completion of the planning stage.

Podcasts from Clever Collections: A National Showcase of Technical Innovations for Digital Collections

Podcasts of sessions at APSR's Clever Collections: A National Showcase of Technical Innovations for Digital Collections conference are now available.

Here are the titles of some repository-oriented presentations:

  • "Enhancing Research Collections by Harvesting Community Annotations"
  • "Integrating Repositories with Researcher Environments"
  • "Object Re-Use and Exchange (ORE): Practice and Experience in the Open Language Archives Community"
  • "The Repository Interoperability Framework"
  • "Taking Aim and (Mostly) Hitting Our Targets: from DART to ARCHER"

AAP Reaches Agreement with Three Universities about E-Reserves Guidelines

The Association of American Publishers has announced it has reached agreement with Hofstra University, Marquette University, and Syracuse University about copyright guidelines for e-reserves.

The guidelines are below:

Here's an excerpt from the press release:

The guidelines, which were developed separately by the three universities, govern how librarians and faculty members distribute copyrighted content through library electronic course reserves systems, course management systems, faculty and departmental web pages and other digital formats.

AAP worked with each of the three universities in cooperative efforts to establish easily understood and common-sense standards that help faculty and staff understand and interpret their rights and responsibilities when using copyrighted content in educational settings. Each of the guidelines reflects the specific needs of the particular university and is consistent with the principles of fair use while providing helpful guidance as to when permission from the copyright holder is required to copy or post materials in digital formats. AAP believes the guidelines, which are similar to those adopted by Cornell University last year, will serve as models for others colleges and universities. . . .

In the last two years AAP has initiated discussions with a number of universities after observing that unlicensed digital copies of course materials were gradually replacing the licensed physical copying of articles, book chapters and other copyrighted works. While it is well established that physical copying of materials for distribution to multiple students, often in compilations known as coursepacks, generally requires permission from the copyright holder, faculty and staff seem less aware that permission is similarly required for distribution of electronic copies of such copyrighted materials.

Read more about it at "AAP Pressures Universities to Limit Fair Use" and "Despite Skeptics, Publishers Tout New 'Fair Use' Agreements With Universities" (Chronicle of Higher Education subscribers only).

Spiro Reviews Last Year's Key Digital Humanities Developments

In a series of three interesting posts, Lisa Spiro, Director of the Digital Media Center and the Educational Technology Research and Assessment Cooperative at Rice University's Fondren Library, has reviewed 2007's major digital humanities developments: "Digital Humanities in 2007 [Part 1 of 3]," "Digital Humanities in 2007 [Part 2 of 3]," and "Digital Humanities in 2007 [Part 3 of 3]."

Podcasts from the CNI Fall 2007 Task Force Meeting

Podcasts are now available from CNI's Fall 2007 Task Force Meeting. Here's a selection:

Scholarly Electronic Publishing Weblog Update (1/9/08)

The latest update of the Scholarly Electronic Publishing Weblog (SEPW) is now available, which provides information about new works related to scholarly electronic publishing, such as books, journal articles, magazine articles, technical reports, and white papers.

Especially interesting are: "Assessment of Self-Archiving in Institutional Repositories: Across Disciplines"; "Copyright and Research: A Different Perspective"; "The Cost Profiles of Alternative Approaches to Journal Publishing"; "Data, Disciplines, and Scholarly Publishing"; "Discovering Books: OCA & GBS Retrospective"; In the Public Interest: The Future of Canadian Copyright Law; "Open Access in 2007"; "An Open Access Mandate for the NIH"; and "The Rutgers Workflow Management System: Migrating a Digital Object Management Utility to Open Source."

NIH Open Access Mandate Becomes Law

President Bush has signed the "Consolidated Appropriations Act, 2008," which includes the NIH open access mandate. The mandate states: "The Director of the National Institutes of Health shall require that all investigators funded by the NIH submit or have submitted for them to the National Library of Medicine's PubMed Central an electronic version of their final, peer-reviewed manuscripts upon acceptance for publication, to be made publicly available no later than 12 months after the official date of publication: Provided, That the NIH shall implement the public access policy in a manner consistent with copyright law."

Read more about it at "OA Mandate at NIH Now Law and "Public Access Mandate Made Law."

Version 70, Scholarly Electronic Publishing Bibliography

Version 70 of the Scholarly Electronic Publishing Bibliography is now available from Digital Scholarship. This selective bibliography presents over 3,195 articles, books, and other digital and printed sources that are useful in understanding scholarly electronic publishing efforts on the Internet.

The Scholarly Electronic Publishing Bibliography: 2006 Annual Edition is also available from Digital Scholarship. Annual editions of the Scholarly Electronic Publishing Bibliography are PDF files designed for printing.

The bibliography has the following sections (revised sections are in italics):

1 Economic Issues
2 Electronic Books and Texts
2.1 Case Studies and History
2.2 General Works
2.3 Library Issues
3 Electronic Serials
3.1 Case Studies and History
3.2 Critiques
3.3 Electronic Distribution of Printed Journals
3.4 General Works
3.5 Library Issues
3.6 Research
4 General Works
5 Legal Issues
5.1 Intellectual Property Rights
5.2 License Agreements
6 Library Issues
6.1 Cataloging, Identifiers, Linking, and Metadata
6.2 Digital Libraries
6.3 General Works
6.4 Information Integrity and Preservation
7 New Publishing Models
8 Publisher Issues
8.1 Digital Rights Management
9 Repositories, E-Prints, and OAI
Appendix A. Related Bibliographies
Appendix B. About the Author
Appendix C. SEPB Use Statistics

Scholarly Electronic Publishing Resources includes the following sections:

Cataloging, Identifiers, Linking, and Metadata
Digital Libraries
Electronic Books and Texts
Electronic Serials
General Electronic Publishing
Images
Legal
Preservation
Publishers
Repositories, E-Prints, and OAI
SGML and Related Standards

Zotero/Internet Archive Alliance to Create Zotero Commons

Dan Cohen has announced a partnership between the Center for History and New Media's Zotero project and the Internet Archive that will create the Zotero Commons, a repository for scholarly materials, as well as personal, restricted-access storage for scholars. The Andrew W. Mellon Foundation is supporting the project.

Is the End of the Print Journal Near?: New ARL Report Examines This Issue

The Association of Research Libraries has published The E-only Tipping Point for Journals: What’s Ahead in the Print-to-Electronic Transition Zone.

Here's an excerpt from the "Executive Summary":

The role of the printed journal in the institutional marketplace faces a steep decline in the coming 5 to 10 years. Print journals will exist mainly to address specialized needs, users, or business opportunities. Financial imperatives will draw libraries first—and ultimately publishers also—toward a tipping point where it no longer makes sense to subscribe to or publish printed versions of most journals.

Publishers will be driven to rationalize their investments in declining print revenue streams and to finance investments in e-publishing infrastructure and emerging opportunities. Some will be faster to do so, such as those already straining from the cost burden. Others will be slower, such as those with a self-supporting base of individual subscribers or significant advertising revenue from print.

A new focus will emerge on productivity in scholarly communication. Experiments will explore new business models and new ways of conducting and facilitating research. Along the way, vexing issues such as those surrounding assurance of long-term access to the scholarly record will continue to be sorted out and perhaps even solved.

Scholarly Electronic Publishing Weblog Update (12/5/07)

The latest update of the Scholarly Electronic Publishing Weblog (SEPW) is now available, which provides information about new works related to scholarly electronic publishing, such as books, journal articles, magazine articles, technical reports, and white papers.

Especially interesting are: "Can Open Access Repositories and Peer-Reviewed Journals Coexist?," "Census of Institutional Repositories in the U.S.: A Comparison Across Institutions at Different Stages of IR Development," "The Creative Commons and Copyright Protection in the Digital Era: Uses of Creative Commons Licenses," "eScience and the Humanities," "Open Access and the Divide between 'Mainstream' and 'Peripheral' Science," "Pathways: Augmenting Interoperability across Scholarly Repositories," "Publishing Journals@UIC," Scholarship in the Digital Age: Information, Infrastructure and the Internet, "Synergies: Building National Infrastructure for Canadian Scholarly Publishing," "The University of California as Publisher," "Update on the Bill Mandating OA at the NIH," "Use and Users of Digital Resources," "What Do Faculty and Students Really Think about E-Books?," and "Will the Parasite Kill the Host? Are Institutional Repositories a Fact of Life—and Does It Matter?"

New Digital Scholarship in the Humanities Weblog

Lisa Spiro, Director of the Digital Media Center and the Educational Technology Research and Assessment Cooperative at Rice University's Fondren Library, has established the Digital Scholarship in the Humanities weblog.

Here's a selection of recent posts: