Institutional Repositories

"Knowledge Infrastructures are Growing Up: The Case for Institutional (Data) Repositories 10 Years After the Holdren Memo"

Institutional data repositories are uniquely positioned to support researchers in sharing scholarly outputs. As funding agencies develop and institute policies for research data access and sharing, institutional data repositories have emerged as a critical feature in ecosystems for data stewardship and sharing. We show that institutional data repositories can meet and exceed the requirements and recommendations of federal data policy, thereby maximizing the benefits of data sharing. We present results of a mixed-method study which explores the adoption and usage of institutional repositories to share data from 2017 to 2023. Data from two previous studies were combined with data collected in 2023 on the data sharing solutions of Association of Research Libraries member institutions in the United States and Canada. The analysis of the aggregated data indicates that data stewardship has increased in both institutional repositories and institutional data repositories with an increase in complementary infrastructure to support data sharing. We then conduct an “infrastructural inversion” (Bowker & Star, 1999) to ‘surface invisible work’ of making data repositories function well, and demonstrate that institutional data repositories have advantages for providing sustainable stewardship, curation, and sharing of research data. Finally, we show that institutional data repositories may produce additional benefits through established infrastructure, local interoperability, and control.

https://doi.org/10.5334/dsj-2024-046

"Toward Enhanced Reusability: A Comparative Analysis of Metadata for Machine Learning Objects and Their Characteristics in Generalist and Specialist Repositories"

Objective: The rapidly increasing prevalence and application of machine learning (ML) across disciplines creates a pressing need to establish guidance for data curation professionals. However, we must first understand the characteristics of ML-related objects shared in generalist and specialist repositories and the extent to which repository metadata fields enable findability and reuse of ML objects.

Methods: We used a combination of API queries and web scraping to retrieve metadata for ML objects in eight commonly used generalist and ML-specific data repositories. We assessed both metadata schema and characteristics of deposited ML objects, within the context of the widely adopted FAIR Principles. We also calculated summary statistics for properties of objects, including number of objects per year, dataset size, domains represented, and availability of related resources.

Results: Generalist repositories excelled at providing provenance metadata, specifically unique identifiers, unambiguous citations, clear licenses, and related resources, while specialist repositories emphasized ML-specific descriptive metadata, such as number of attributes and instances and task type. In terms of object content, we noted a wide range of file formats, as well as licenses, all of which impact reusability.

Conclusions: Generalist repositories will benefit from some of the practices adopted by specialists, and specialist repositories will benefit from adopting proven data curation practices of generalist repositories. A step forward for repositories will be to invest more into use of labels and persistent identifiers to improve workflow documentation, provenance, and related resource linking of ML objects, which will increase their findability, interoperability, and reusability.

https://doi.org/10.7191/jeslib.685

Paywall: "Constructing Risk in Trustworthy Digital Repositories"

This article investigates the construction of risk within trustworthy digital repository audits. It contends that risk is a social construct, and social factors influence how stakeholders in digital preservation processes comprehend and react to risk.

https://doi.org/10.1108/JD-08-2023-0157

"Analyzing Research Data Repositories (RDR) from BRICS Nations: A Comprehensive Study"

As of March 2, 2024, re3data.org indexes a total of 3,192 Research Data Repositories (RDRs) worldwide, with BRICS nations contributing 195. China leads among BRICS nations, followed by India, Russia, and Brazil. . . . "House, tailor-made " software is widely used for creating RDRs, followed by Dataverse and DSpace. . . . Most repositories are disciplinary, followed by institutional ones. Most repositories specify data upload types, with "restricted " being the most common, followed by closed types. Open access is predominant in data access, followed by restricted access and embargo periods, while a small number restrict access entirely.

https://doi.org/10.1108/LM-04-2024-0040

"Developing Open Access Resource Management Principles in a Consortial Environment: A University of California Model"

In the summer of 2021, the University of California (UC) migrated to a new integrated library system, called the Systemwide Integrated Library System project (SILS), which for the first time brought all ten UC campuses, two regional storage facilities, and the California Digital Library (CDL) together into one shared library system. With new potential for increased collaboration and cooperation, SILS leadership groups identified consortial open access (OA) resource management as a key opportunity in the new system, in alignment with UC’s priorities around discovery and access to library collections, as well as UC’s commitment to open access and transforming the scholarly communication landscape. This article discusses the formation of the UC Open Access Resource Management Task Force (OARMTF), a group charged to investigate what it would mean to consortially manage OA resources. Specifically, this article focuses on the OARMTF’s work setting out principles for OA resource management, which the authors hope may serve as a useful case study for other institutions or consortia interested in developing principles around OA resource management, as well as encourage more discussion and research into best practices for consortial management of OA resources.

https://doi.org/10.5860/lrts.68n1.8216

"Opening Up: A Global Context for Local Open Access Initiatives in Higher Education"

Open access policies and mandates can be a useful tool in persuading faculty at higher education institutions around the globe to produce and share open scholarship. But are such policies widely written, accepted, and adopted? Leveraging information found on the Registry of Open Access Repositories Mandatory Archiving Policies, this paper analyzes open access policies at higher education institutions worldwide. The data indicate that Europe holds the most policies, while fewer policies have been enacted in the Americas, Africa, Oceania, and Asia due to a myriad of barriers. Overall, better strategies to promote open access are needed, and such strategies may not necessarily take the form of an open access policy. My own investigation of global open access policies has informed my practices with respect to open access. In this paper, I demonstrate how librarians acting as policy entrepreneurs can assist with the promotion of open access at their institutions and then conclude with suggestions, solutions, and pathways beyond policy adoption to promote and advocate for open access.

https://tinyurl.com/2h3uz5n4

"Preprints, Journals and Openness: Disentangling Goals and Incentives "

I would argue that private funders such as the Gates Foundation or the Howard Hughes Medical Institute (HHMI) could provide material support through grants and policies for quality peer review, baking peer review into selection of grantees. Such an approach will require careful structures and mechanisms for reviewer selection, and measures of success, or we may run the risk of creating further inequities. Mind you, in many fields it is just hard to find good reviewers prepared to put in the effort required for a considered, thoughtful review. Societies, such as my own, could also consider material ways to support peer review more actively — a philosophical and practical approach to raising the profile of peer review at an early stage in the life of a researcher.

https://tinyurl.com/ymckyb9x

Current State and Future Directions for Open Repositories in Europe

In January 2023, OpenAIRE, LIBER, SPARC Europe, and COAR launched a joint strategy aimed at strengthening the European repository network. As a first step, a survey of the European repository landscape was undertaken in February-March 2023. The survey found that, collectively, European repositories acquire, preserve and provide open access to tens or possibly hundreds of millions of valuable research outputs and represent critical, not-for-profit infrastructure in the European open science landscape. They are used for sharing articles that may be pay-walled in published journals, but also for providing access to a large variety of other types of research outputs including research data, theses/dissertations, conference papers, preprints, code, and so on.

However, in order to ensure the European repository network is fit for purpose and able to support the evolving needs of the research community, the survey also identified three areas in particular that could be strengthened: maintaining up-to-date, highly functioning software platforms; applying consistent and comprehensive good practices in terms of metadata, preservation, and usage statistics; and gaining appropriate visibility in the scholarly ecosystem.

Despite the challenges, the current climate offers exciting opportunities for repositories. Many funders are actively promoting the repository route for articles because of their role in supporting equitable access to content (i.e. no fees to access or deposit). The value proposition for open science is growing and repositories are increasingly recognised as the main mechanism for collecting and providing access to a wide range of other research outputs. Add to this, the nascent, but growing, interest in the publish-review-curate model in which repositories have a central function, and it seems they are well placed to expand their current role in the ecosystem.

https://doi.org/10.5281/zenodo.10255559

"Jupyter Notebooks and Institutional Repositories: A Landscape Analysis of Realities, Opportunities and Paths Forward"

Jupyter Notebooks are important outputs of modern scholarship, though the longevity of these resources within the broader scholarly record is still unclear. Communities and their creators have yet to holistically understand creation, access, sharing and preservation of computational notebooks, and such notebooks have yet to be designated a proper place among institutional repositories or other preservation environments as first class scholarly digital assets. Before this can happen, repository managers and curators need to have the appropriate tools, schemas and best practices to maximize the benefit of notebooks within their repository landscape and environments.

This paper explores the landscape of Jupyter notebooks today, and focuses on the opportunities and challenges related to bringing Jupyter Notebooks into institutional repositories. We explore the extent to which Jupyter Notebooks are currently accessioned into institutional repositories, and how metadata schemas like CodeMeta might facilitate their adoption. We also discuss characteristics of Jupyter Notebooks created by researchers at the National Center for Atmospheric Research, to provide additional insight into how to assess and accession Jupyter Notebooks and related resources into an institutional repository.

https://journal.code4lib.org/articles/17751

"Islandora for Archival Access and Discovery"

This article is a case study describing the implementation of Islandora 2 to create a public online portal for the discovery, access, and use of archives and special collections materials at the University of Nevada, Las Vegas. The authors will explain how the goal of providing users with a unified point of access across diverse data (including finding aids, digital objects, and agents) led to the selection of Islandora 2 and they will discuss the benefits and challenges of using this open source software. They will describe the various steps of implementation, including custom development, migration from CONTENTdm, integration with ArchivesSpace, and developing new skills and workflows to use Islandora most effectively. As hindsight always provides additional perspective, the case study will also offer reflection on lessons learned since the launch, insights on open-source repository sustainability, and priorities for future development.

https://journal.code4lib.org/articles/17929

"Open Access Movement in the Scholarly World: Pathways for Libraries in Developing Countries"

Open access is a scholarly publishing model that has emerged as an alternative to traditional subscription-based journal publishing. This study explores the adoption of the open access movement worldwide and the role that libraries can play in addressing those factors which are slowing its progress within developing countries. The study has drawn upon both qualitative data from a focused literature review and quantitative data from major open access platforms. The results indicate that while the open access movement is steadily gaining acceptance worldwide, the progress in developing countries within geographical areas such as Africa, Asia and Oceania is quite a bit slower. Two significant factors are the cost of publishing fees and the lack of institutional open access mandates and policies to encourage uptake. The study provides suggested strategies for academic libraries to help overcome current challenges.

https://doi.org/10.1177/01655515231202758

"US Repository Network Launches Pilot to Enhance Discoverability of Open Access Content in Repositories"

In November, the US Repository Network (USRN) will launch a pilot project aimed at improving the discoverability of articles in repositories. This pilot project involves the use of services from CORE, a not-for-profit aggregator based at Open University in the UK, to evaluate and improve local repository practices. Additional technical support will be provided by Antleaf Ltd.

As part of the project, CORE will aggregate the metadata and full text of articles from a subset of US repositories, allowing them to be findable through a centralized discovery service with prominent links back to the original full text of the repository. At the same time, the project will assess current practices related to metadata quality, the tracking of Open Access deposits, the use of PIDs, technical support for OAI-PMH, and the adoption of more recent protocols, such as FAIR Signposting. At the level of the centralized aggregation, CORE will enrich the existing US metadata with information from its larger international aggregation. A Dashboard service for participating institutions will be provided, enabling them to assess, validate and monitor their practices.

https://tinyurl.com/2utfpvj3

"FAIR EVA: Bringing Institutional Multidisciplinary Repositories into the FAIR Picture"

The FAIR Principles are a set of good practices to improve the reproducibility and quality of data in an Open Science context. Different sets of indicators have been proposed to evaluate the FAIRness of digital objects, including datasets that are usually stored in repositories or data portals. However, indicators like those proposed by the Research Data Alliance are provided from a high-level perspective that can be interpreted and they are not always realistic to particular environments like multidisciplinary repositories. This paper describes FAIR EVA, a new tool developed within the European Open Science Cloud context that is oriented to particular data management systems like open repositories, which can be customized to a specific case in a scalable and automatic environment. It aims to be adaptive enough to work for different environments, repository software and disciplines, taking into account the flexibility of the FAIR Principles. As an example, we present DIGITAL.CSIC repository as the first target of the tool, gathering the particular needs of a multidisciplinary institution as well as its institutional repository.

https://doi.org/10.1038/s41597-023-02652-8

"Where Is All the Research Software? An Analysis of Software in UK Academic Repositories"

This research examines the prevalence of research software as independent records of output within UK academic institutional repositories (IRs). There has been a steep decline in numbers of research software submissions to the UK’s Research Excellence Framework from 2008 to 2021, but there has been no investigation into whether and how the official academic IRs have affected the low return rates. In what we believe to be the first such census of its kind, we queried the 182 online repositories of 157 UK universities. Our findings show that the prevalence of software within UK Academic IRs is incredibly low. Fewer than 28% contain software as recognised academic output. Of greater concern, we found that over 63% of repositories do not currently record software as a type of research output and that several Universities appeared to have removed software as a defined type from default settings of their repository. We also explored potential correlations, such as being a member of the Russell group, but found no correlation between these metadata and prevalence of records of software. Finally, we discuss the implications of these findings with regards to the lack of recognition of software as a discrete research output in institutions, despite the opposite being mandated by funders, and we make recommendations for changes in policies and operating procedures.

https://doi.org/10.7717/peerj-cs.1546

Paywall: "FAST Headings in MODS: Michigan State University Libraries Digital Repository Case Study"

Since 2016, the [MSUL] digital repository has been using Faceted Application of Subject Terminology (FAST) subject headings as its primary subject vocabulary. . . The MSUL FAST use case presents some challenges that are not addressed by existing MARC-focused FAST tools. This paper will outline the MSUL digital repository team’s justification for including FAST headings in the digital repository as well as workflows for adding FAST headings to Metadata Object Description Schema (MODS) metadata, their maintenance, and utilization for discovery.

https://doi.org/10.1080/01639374.2023.2213708

| Research Data Publication and Citation Bibliography | Research Data Sharing and Reuse Bibliography | Research Data Curation and Management Bibliography | Digital Scholarship |

"OER Discovery: Ensuring that OER Rise to the Top"

This paper discusses the challenges of ensuring discoverability of Open Educational Resources (OER) in the absence of clear standards for sharing them. Despite the efforts of librarians and instructors to create a wealth of OER, discoverability remains limited and often relegated to a list of links on a LibGuide. The authors address this challenge by highlighting technical and descriptive barriers to OER discoverability. The authors then describe the development of a hybrid metadata standard for OER and its deployment through the institutional repository. Although provisional, this approach ensures that OER records can be adapted to future metadata standards and exported to third-party repositories. This paper underscores the importance of developing an effective metadata standard for OER to ensure their discoverability for learners and educators.

https://doi.org/10.13001/joerhe.v2i1.7879

"DSpace 7 Benefits: Is It Worth Upgrading?"

With the release of DSpace version 7, a natural question that arises is whether the new version offers enough new functionalities to motivate system administrators to upgrade. This paper briefly describes the most important changes, including new features and bug fixes, included in DSpace 7.4 and prior minor versions. The next parts of this paper explore our estimate that there are several thousand DSpace-based systems globally that will likely have to be upgraded in the near future. The main reason for this need is that older versions of DSpace (including 5.x) have reached the end of their developer support period or are reaching it in mid-2023. Based on our own upgrade experience, we propose suggestions and recommendations on migrating from the previous DSpace 6.3-based environment to the new one in a case study that concludes this article.

https://tinyurl.com/32t7ac9m

"The State of Scientific PDF Accessibility in Repositories: A Survey in Switzerland"

This survey analyzes the quality of the portable document format (PDF) documents in online repositories in Switzerland, examining their accessibility for people with visual impairments. Two minimal accessibility features were analysed: the PDFs had to have tags and a hierarchical heading structure. The survey also includes interviews with the managers or heads of multiple Swiss universities’ repositories . . . An analysis of interviewee responses indicates an overall lack of awareness of PDF accessibility, and shows that online repositories currently have no concrete plans to address the issue. This paper concludes by presenting a set of recommendations for online repositories to improve the accessibility of their PDF documents.

https://doi.org/10.1002/leap.1581

Paywall: "Proactive Institutional Repository Collection Development Techniques: Archiving Gold Open Access Articles and Metadata Retrieved with Web Scraping"

This article describes a method for copying open access articles and corresponding descriptive metadata from open repositories for archiving in an institutional repository using Beautiful Soup and Selenium as web scraping tools. This method quickly added hundreds of articles to an IR without relying on faculty participation or consulting publisher policies, increasing repository downloads and usage.

https://doi.org/10.1080/01930826.2023.2240190

"The Medical Institutional Repositories in Libraries (MIRL) Symposium: A Blueprint Designed in Response to a Community of Practice Need"

Background: Health sciences libraries in medical schools, academic health centers, health care networks, and hospitals have established institutional repositories (IRs) to showcase their research achievements, increase visibility, expand the reach of institutional scholarship, and disseminate unique content. Newer roles for IRs include publishing open access journals, tracking researcher productivity, and serving as repositories for data sharing. Many repository managers oversee their IR with limited assistance from others at their institution. Therefore, IR practitioners find it valuable to network and learn from colleagues at other institutions.

Case Presentation: This case report describes the genesis and implementation of a new initiative specifically designed for a health sciences audience: the Medical Institutional Repositories in Libraries (MIRL) Symposium. Six medical librarians from hospitals and academic institutions in the U.S. organized the inaugural symposium held virtually in November 2021. The goal was to fill a perceived gap in conference programming for IR practitioners in health settings. Themes of the 2021 and subsequent 2022 symposium included IR management, increasing readership and engagement, and platform migration. Post-symposium surveys were completed by 73/238 attendees (31%) in 2021 and by 62/180 (34%) in 2022. Feedback was overwhelmingly positive.

Discussion: Participant responses in post-symposium surveys rated MIRL highly. The MIRL planning group intends to continue the symposium and hopes MIRL will steadily evolve, build community among IR practitioners in the health sciences, and expand the conversation around best practices for digital archiving of institutional content. The implementation design of MIRL serves as a blueprint for collaboratively bringing together a professional community of practice.

https://doi.org/10.5195/jmla.2023.1503

"Is There a Case for Accepting Machine Translated Scholarly Content in Repositories?"

Multilingualism is a critical characteristic of a healthy, inclusive, and diverse research communications landscape. However, multilingualism presents a particular challenge for the discovery of research outputs. Although researchers and other information seekers may only be able to read in one or two languages, they may want to know about all the relevant research in their area, regardless of the language in which it is published. Conversely, information seekers may want to discover research outputs in their own language(s) more easily. To facilitate this, COAR Task Force on Supporting Multilingualism and non-English Content in Repositories has been developing and promoting good practices for repositories in managing multilingual and non-English content. In the course of our work, the topic of machine translation (MT) has sparked a heated discussion within the Task Group and we would like to share with you the nature of this discussion.

https://bit.ly/42D1nbF

"What’s Missing? The Role of Community Colleges in Building a More Inclusive Institutional Repository Landscape"

The precise number of community college communities with access to an IR is unknown and certainly higher than ten, but uptake is low. As a result, the rich intellectual outputs generated at these institutions are not openly shared. Repositories provide community college communities with the ability to read content they would not otherwise have access to, but to fulfill the original purposes of open access to "share the learning of the rich with the poor and the poor with the rich," it’s imperative that the faculty and students at community colleges are recognized as contributors to the scholarly communications landscape and empowered to disseminate their works, via repositories, to the larger knowledge ecosystem

https://doi.org/10.5860/crln.84.4.173

Digital Scholarship Releases New PDF Versions of Its Bibliographies

This spring, Digital Scholarship’s bibliographies in the HTML format were reformatted as single page files with internal navigation. This included all bibliographies that were in HTML format only as well as the HTML versions of paperback books. These new PDFs are in a 12 point font and are designed for printing; however, they also have live links for immediate access. There were no content changes. For a list of all Digital Scholarship publications, see the site map.

Academic Library as Scholarly Publisher Bibliography, v. 3

Altmetrics Bibliography

Digital Curation and Preservation Bibliography, v. 2

Digital Curation Bibliography: Preservation and Stewardship of Scholarly Works

Digital Curation Bibliography: Preservation and Stewardship of Scholarly Works, 2012 Supplement

Digital Curation Resource Guide

Electronic Theses and Dissertations Bibliography, v.7

E-science and Academic Libraries Bibliography

Google Books Bibliography, v. 7

Institutional Repository Bibliography, v. 4

Open Access Bibliography: Liberating Scholarly Literature with E-Prints and Open Access Journals

Open Access Journals Bibliography

Open Access Webliography

Research Data Curation Bibliography, v. 10

Research Data Publication and Citation Bibliography

Research Data Sharing and Reuse Bibliography

Scholarly Electronic Publishing Bibliography, v. 80

Transforming Peer Review Bibliography

Transforming Scholarly Publishing through Open Access: A Bibliography

Study on the Readiness of Research Data and Literature Repositories to Facilitate Compliance With the Open Science Horizon Europe MGA Requirement

In this study we analysed 220 repositories and, via a structured methodology, we identified 165 trusted repositories and tested their readiness to facilitate the compliance with the HE MGA Open Science requirements.

We show that it is not straightforward to assess whether a given repository is suitable to facilitate compliance with the HE MGA requirements. This is mainly due to varying interpretations of definitions and requirements, whether information on repository specifications is publicly available, and the high level of technical expertise needed to assess all requirements.

We highlight that repository registries, such as FAIRsharing, re3data or the CoreTrustSeal (CTS) website, are not sufficient on their own to assess the readiness of repositories to facilitate compliance with the HE MGA requirements, as the definition of what constitutes a trusted repository is subtle and varied and needs to be carefully interpreted and applied to repositories. This is also the case for related concepts such as community endorsement or for policy requirements in terms of preservation, curation and security of the repository contents.

https://doi.org/10.5281/zenodo.7728016

Forthcoming: Discoverability in Digital Repositories: Systems, Perspectives, and User Studies

It examines discoverability in digital repositories from both user and system perspectives by exploring how users access content (including their search patterns and habits, need for digital content, effects of outreach, or integration with Wikipedia and other web-based tools) and how systems support or prevent discoverability through the structure or quality of metadata, system interfaces, exposure to search engines or lack thereof, and integration with library discovery tools.

bit.ly/3XbbRvT

| Research Data Publication and Citation Bibliography | Research Data Sharing and Reuse Bibliography | Research Data Curation and Management Bibliography | Digital Scholarship |