"Daily Life in the Open Biologist’s Second Job, as a Data Curator"


Background

Data reusability is the driving force of the research data life cycle. However, implementing strategies to generate reusable data from the data creation to the sharing stages is still a significant challenge. Even when datasets supporting a study are publicly shared, the outputs are often incomplete and/or not reusable. The FAIR (Findable, Accessible, Interoperable, Reusable) principles were published as a general guidance to promote data reusability in research, but the practical implementation of FAIR principles in research groups is still falling behind. In biology, the lack of standard practices for a large diversity of data types, data storage and preservation issues, and the lack of familiarity among researchers are some of the main impeding factors to achieve FAIR data. Past literature describes biological curation from the perspective of data resources that aggregate data, often from publications.

Methods

Our team works alongside data-generating, experimental researchers so our perspective aligns with publication authors rather than aggregators. We detail the processes for organizing datasets for publication, showcasing practical examples from data curation to data sharing. We also recommend strategies, tools and web resources to maximize data reusability, while maintaining research productivity.

Conclusion

We propose a simple approach to address research data management challenges for experimentalists, designed to promote FAIR data sharing. This strategy not only simplifies data management, but also enhances data visibility, recognition and impact, ultimately benefiting the entire scientific community.

https://doi.org/10.12688/wellcomeopenres.22899.1

| Artificial Intelligence |
| Research Data Curation and Management Works |
| Digital Curation and Digital Preservation Works |
| Open Access Works |
| Digital Scholarship |

"Maggot: An Ecosystem for Sharing Metadata within the Web of Fair Data"


We developed Maggot which stands for Metadata Aggregation on Data Storage, specifically designed to annotate datasets by generating metadata files to be linked into storage spaces. Maggot enables users to seamlessly generate and attach comprehensible metadata to datasets within a collaborative environment. This approach seamlessly integrates into a data management plan, effectively tackling challenges related to data organisation, documentation, storage, and frictionless FAIR metadata sharing within the collaborative group and beyond. Furthermore, for enabling metadata crosswalk, metadata generated with Maggot can be converted for a specific data repository or configured to be exported into a suitable format for data harvesting by third-party applications.

https://doi.org/10.1101/2024.05.24.595703

| Artificial Intelligence |
| Research Data Curation and Management Works |
| Digital Curation and Digital Preservation Works |
| Open Access Works |
| Digital Scholarship |

"Enhancing the FAIRness of Arctic Research Data Through Semantic Annotation"


The National Science Foundation’s Arctic Data Center is the primary data repository for NSF-funded research conducted in the Arctic. There are major challenges in discovering and interpreting resources in a repository containing data as heterogeneous and interdisciplinary as those in the Arctic Data Center. This paper reports on advances in cyberinfrastructure at the Arctic Data Center that help address these issues by leveraging semantic technologies that enhance the repository’s adherence to the FAIR data principles and improve the Findability, Accessibility, Interoperability, and Reusability of digital resources in the repository. We describe the Arctic Data Center’s improvements. We use semantic annotation to bind metadata about Arctic data sets with concepts in web-accessible ontologies. The Arctic Data Center’s implementation of a semantic annotation mechanism is accompanied by the development of an extended search interface that increases the findability of data by allowing users to search for specific, broader, and narrower meanings of measurement descriptions, as well as through their potential synonyms. Based on research carried out by the DataONE project, we evaluated the potential impact of this approach, regarding the accessibility, interoperability, and reusability of measurement data. Arctic research often benefits from having additional data, typically from multiple, heterogeneous sources, that complement and extend the bases – spatially, temporally, or thematically – for understanding Arctic phenomena. These relevant data resources must be ‘found’, and ‘harmonized’ prior to integration and analysis. The findings of a case study indicated that the semantic annotation of measurement data enhances the capabilities of researchers to accomplish these tasks.

https://doi.org/10.5334/dsj-2024-002

| Research Data Curation and Management Works |
| Digital Curation and Digital Preservation Works |
| Open Access Works |
| Digital Scholarship |

"Introducing Open Data Editor (beta): Towards a No-Code Data App for Everyone "


  1. Intuitive Data Editing: Open Data Editor (beta) provides a user-friendly, spreadsheet-like interface that allows you to view, edit, and validate your data effortlessly.
  2. Data Transformation: Easily transform your data from one format to another with a wide range of supported data formats, including CSV, Excel, JSON, and more.
  3. Data Validation: Ensure data quality and consistency with built-in validation checks that generate a visual validation report, making it super easy for you to clean your data.
  4. Schema Management: Define and manage data schemas to ensure data consistency and compliance with standards.
  5. Data Publishing: Seamlessly publish your data to the web or data portals. It is easy to publish the processed data to CKAN, Github and Zenodo with a single button click, making it accessible to a wider audience and increasing its impact.
  6. Generative AI: Optionally add a generative AI provider to unlock many features based on chat-based language models. The feature is currently limited to OpenAI, but more providers will be added soon.

https://tinyurl.com/2xwcp87x

| Artificial Intelligence and Libraries Bibliography |
Research Data Curation and Management Works |
| Digital Curation and Digital Preservation Works |
| Open Access Works |
| Digital Scholarship |

Paywall: "Data Visualization as a Research Support Service in Academic Libraries: An Investigation of World-Class Universities"

https://doi.org/10.1016/j.acalib.2021.102397

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Digital Curation News (8/23/2017) #digitalcuration #digitalpreservation #datamanagement #researchdata #rdm

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Digital Curation News (6/6/2017) #digitalcuration #digitalpreservation #datamanagement #researchdata #rdm

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Digital Curation News (4/3/2017) #digitalcuration #digitalpreservation #datamanagement #researchdata #rdm

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Digital Curation News (1/27/2017) #digitalcuration #digitalpreservation #datamanagement #researchdata #rdm

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